表2_组织特异性抗癌肽预测模型比较分析:ACP-Boost框架.csv

基于 ACP-Boost 的组织特异性抗癌肽预测模型比较分析表2数据,覆盖九类癌症相关组织并比较多种机器学习模型。

NIAID Data Ecosystem
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表格分类anticancer peptidescancer therapeuticsdataset constructiondipeptide compositionfeature encodingsmachine learningtissue-specific classificationXGBoost
Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv

基本信息

模态
表格
大小
0.000019983 GB
任务类型
分类
许可
CC BY 4.0
创建/更新时间
2026-10-17
版本
v1

资源简介

表2_组织特异性抗癌肽预测模型比较分析:ACP-Boost框架.csv

【一句话概览】

本数据集是 figshare 公开的结构化表格数据集,收录 1 个文件、合计 19.98 KB,主题涵盖 anticancer peptides、cancer therapeutics、dataset construction、dipeptide composition、feature encodings,可用于统计建模、特征工程与队列分析,CC BY 4.0 许可开放获取。

【数据集背景】

本数据集源站标题为《Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv》。配套论文《Evolution of Machine Learning Algorithms in the Prediction and Design of Anticancer Peptides》发表于 Current Protein & Peptide Science(2020),DOI:10.2174/1389203721666200117171403。源站首次发布:2026-03-26。

【数据内容】

源站原始描述:Cancer remains a major global health burden, and conventional treatments such as surgery, radiotherapy, and chemotherapy are often limited by systemic toxicity, drug resistance, and high cost. Anticancer peptides (ACPs) have emerged as promising therapeutic candidates because of their selective activity against tumor cells; however, experimental identification of ACPs is labor-intensive and time-consuming, and peptide activity may vary across tissue contexts. Although many computational models h…

中文译文(机器翻译,仅供快速理解,请以原文为准):癌症仍然是全球主要的健康负担,手术、放疗和化疗等传统治疗常受到全身毒性、耐药性和高成本的限制。抗癌肽(ACPs)因其对肿瘤细胞的选择性活性而成为有前景的治疗候选物;然而,ACPs 的实验鉴定劳动强度大且耗时,并且肽活性可能因组织背景而异。尽管已开发了许多用于一般 ACP 预测的计算模型,但组织特异性 ACP 分类仍探索不足。在本研究中,我们开发了 ACP-Boost,一种组织感知机器学习框架,用于九种癌症相关组织的组织特异性 ACP 分类:血液、脑、乳腺、宫颈、结肠、肝脏、肺、前列腺和皮肤。从 CancerPPD2 和 DCTPep 整合了经实验验证的肽记录,随后进行预处理、冗余控制和组织注释。肽序列被编码为 473 维特征向量,包括氨基酸组成(AAC)、二肽组成(DPC)、理化性质组成(PCP)和伪氨基酸组成(PseAAC)。为在保留原始序列分布的同时解决类别不平衡,我们将任务表述为一对多分类问题,应用基于肽序列的组感知训练-测试划分,并强调适用于不平衡数据的评价指标。我们系统比较了五种机器学习算法,包括支持向量机、随机森林、逻辑回归、k近邻和 XGBoost。其中,XGBoost 在各组织中表现出最稳定的总体性能。结果表明,肽序列衍生描述符包含可测量的组织相关信号,

主表 Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv 含 6 列、样本前 361 行结构完整。

【数据结构与技术规格】

文件数 1 个,合计 19.98 KB。Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv:text/csv,19.98 KB。数据集 DOI:10.3389/fmolb.2026.1815309.s002。

【主题与分类】

源站学科分类:Molecular Biology。主题标签:anticancer peptides、cancer therapeutics、dataset construction、dipeptide composition、feature encodings、machine learning、tissue-specific classification、XGBoost。

【适用方向】

结构化表格数据可直接用于统计建模、特征工程与队列分析。结构化表格数据可直接用于统计建模、特征工程与队列分析。

【获取与许可】

源站页面:https://frontiersin.figshare.com/articles/dataset/Table_2_Comparative_analysis_of_tissue-specific_anticancer_peptide_prediction_models_ACP-Boost_framework_csv/31858351

使用许可:CC BY 4.0(https://creativecommons.org/licenses/by/4.0/)。

规范引用:Kang, Ruizhe; Yuan, Weichen; Tang, Mingjun; Zhou, Hongguang (2026). Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv. Frontiers. Dataset

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下载信息

注册下载

需要注册 Kaggle 账号并登录后下载,适合需要跟踪下载记录和使用 API 的用户。

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公开下载

无需注册即可直接获取公开样本或文档,适合快速预览和评估数据集质量。

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公开数据集受托下载与技术交付服务。

提供高速下载与技术交付服务(收技术服务费,非数据销售)

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当前数据集主要来源为 Kaggle 公开托管,完整影像包建议通过原始链接或 Kaggle API 获取。

使用方式

数据集获取(Figshare)

命令行下载

curl -L -o "Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv" "https://ndownloader.figshare.com/files/63113737"

文件清单

  • Table 2_Comparative analysis of tissue-specific anticancer peptide prediction models: ACP-Boost framework.csv(19.98 KB)

文件总体积 19.98 KB(源站 API 实测)。

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

数据说明

Cancer remains a major global health burden, and conventional treatments such as surgery, radiotherapy, and chemotherapy are often limited by systemic toxicity, drug resistance, and high cost. Anticancer peptides (ACPs) have emerged as promising therapeutic candidates because of their selective activity against tumor cells; however, experimental identification of ACPs is labor-intensive and time-consuming, and peptide activity may vary across tissue contexts. Although many computational models have been developed for general ACP prediction, tissue-specific ACP classification remains insufficiently explored. In this study, we developed ACP-Boost, a tissue-aware machine learning framework for tissue-specific ACP classification across nine cancer-related tissues: blood, brain, breast, cervix, colon, liver, lung, prostate, and skin. Experimentally validated peptide records were integrated from CancerPPD2 and DCTPep, followed by preprocessing, redundancy control, and tissue annotation. Peptide sequences were encoded into 473-dimensional feature vectors comprising amino acid composition (AAC), dipeptide composition (DPC), physicochemical property composition (PCP), and pseudo-amino acid composition (PseAAC). To address class imbalance while preserving the original sequence distribution, we formulated the task as a one-versus-rest classification problem, applied group-aware train-test splitting based on peptide sequences, and emphasized evaluation metrics suitable for imbalanced data. We systematically compared five machine learning algorithms, including support vector machine, random forest, logistic regression, k-nearest neighbors, and XGBoost. Among them, XGBoost showed the most stable overall performance across tissues. The results indicate that peptide sequence-derived descriptors contain measurable tissue-associated signals, although predictive separability remains moderate for several cancer types. Feature importance analysis further suggested that both shared charge-related properties and tissue-dependent sequence descriptors contribute to model discrimination. Overall, this study provides a comparative computational framework for tissue-specific ACP classifica

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.3389/fmolb.2026.1815309.s002(source: https://frontiersin.figshare.com/articles/dataset/Table_2_Comparative_analysis_of_tissue-specific_anticancer_peptide_prediction_models_ACP-Boost_framework_csv/31858351)。

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