Aneumo合成动脉瘤血流动力学集

Aneumo 可用于动脉瘤血流动力学代理模型、形态-流场关系学习和快速风险评估研究,尤其适合需要大量三维模拟样本的深度学习方法。

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2025-01-01 更新
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基本信息

模态
图像
任务类型
分类
创建/更新时间
2025-01-01

资源简介

Aneumo 是面向颅内动脉瘤血流动力学的大规模合成数据集,提供几何和 CFD 相关模拟数据。

原始链接

https://github.com/Xigui-Li/Aneumo

arXiv 论文 →
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下载信息

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千方医数集,医疗数据集部分,是为社区服务的公开医疗数据集搜索引擎,并不存储或者下载原始的任何数据。 如果您有其他医疗数据需求,可以和客服联系,或者下工单。我们有强大的三甲医疗机构帮助您提供个性化的医疗数据定制、采集、标注服务。

使用方式

数据集获取

git clone https://github.com/Xigui-Li/Aneumo.git

curl -L -o repo.zip https://github.com/Xigui-Li/Aneumo/archive/refs/heads/main.zip
unzip repo.zip

源站 README 摘录(使用方式)

Aneumo: A Large-Scale Multimodal Aneurysm Dataset with Computational Fluid Dynamics Simulations and Deep Learning Benchmarks

Project Overview

Aneumo is a large-scale, comprehensive, multimodal cerebral aneurysm hemodynamics dataset designed to advance machine learning and computational fluid dynamics (CFD) research.
This dataset is built on 427 real aneurysm geometries and includes:

  • 10,660 high-precision 3D models (synthetic aneurysm evolutions).
  • A massive 95,940 total simulation cases, uniquely including:
    • 85,280 steady-state simulations (under 8 flow conditions).
    • 10,660 high-fidelity transient (pulsatile) simulations.
  • Pre-computed WSS: Wall Shear Stress (WSS), velocity, and pressure fields are pre-computed for all 95,940 cases.
  • Multimodal Inputs: Rich geometric representations including Segmentation Masks, Point Clouds, and Meshes.
    <div align=“center”>

This project provides deep learning benchmark code for:

  1. Steady-State Models — “Syn-to-Real” task (training on synthetic Aneumo, testing on real AneuX data):

    • DeepONet-based model
    • Hybrid model combining Swin Transformer with DeepONet (for multimodal inputs: masks + point clouds)
  2. Transient Models — Temporal WSS prediction from pulsatile CFD data:

    • Aneumo (Temporal DeepONet V2): History encoder (Transformer/MLP) + Swin Transformer geometry encoder + DeepONet with cross-attention
    • Baselines: FNO, 3D U-Net, MeshGraphNet
    • Cross-geometry Generalization: Multi-case training and evaluation with geometry-split and time-split protocols

<div align=“center”>
<img src=“https://github.com/Xigui-Li/Aneumo/blob/main/fig/network.png?raw=true” width=“800px”>
<p><b>Figure 2:</b> Schematic illustration of the DeepONet-SwinT model architecture for predicting aneurysm hemodynamic parameters.</p>
</div>

Dataset Features and Contributions

Key Contributions

  1. First Large-Scale, Dual-Mode Hemodynamics Dataset: Provides 95,940 total hemodynamic data samples. This is the first dataset to include 10,660 high-fidelity transient (pulsatile) simulations at this scale, filling a critical gap for spatio-temporal AI models.
  2. Pre-Computed WSS for All Cases: To maximize usability and lower the barrier for AI research, the critical Wall Shear Stress (WSS) fiel

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

完整仓库:github.com/Xigui-Li/Aneumo

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