COVID-19开放研究数据集

包含大量COVID-19学术文章和生物医学摘要的文本数据集,用于摘要和NLP研究。

Arjun-08Arjun-08
GitHub
2024-05-17 更新
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文本COVID-19文本

基本信息

模态
文本
创建/更新时间
2024-05-17

资源简介

该数据集包含CORD-19(超过1,000,000篇COVID-19及相关冠状病毒学术文章)和Biomedical Abstracts(210,000篇训练摘要、各45,000篇验证及测试集),用于文本摘要和NLP任务。

原始链接

https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization

访问原始数据

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如需原始数据获取支持或标注服务,请联系我们。

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下载信息

注册下载

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暂未开放

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有偿下载

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暂未开放

千方医数集,医疗数据集部分,是为社区服务的公开医疗数据集搜索引擎,并不存储或者下载原始的任何数据。 如果您有其他医疗数据需求,可以和客服联系,或者下工单。我们有强大的三甲医疗机构帮助您提供个性化的医疗数据定制、采集、标注服务。

使用方式

数据集获取

git clone https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization.git

curl -L -o repo.zip https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization/archive/refs/heads/main.zip
unzip repo.zip

源站 README 摘录(使用方式)

Sequence-to-sequence networks for multi-text document summarization on medical dataset

Overview

This project explores the application of advanced sequence-to-sequence networks and transformer models for multi-text document summarization in the medical domain. Given the exponential growth of medical literature, efficiently summarizing this vast amount of information is crucial for healthcare professionals, researchers, and policymakers. Our research focuses on leveraging state-of-the-art natural language processing (NLP) techniques to generate concise, informative, and coherent summaries of medical documents.

Project Objectives

  • Develop and fine-tune transformer models: Utilize models such as BART, BERT, PEGASUS, and T5 for the task of summarizing biomedical research articles.
  • Evaluate model performance: Assess the summarization quality using metrics like ROUGE to ensure the generated summaries are accurate and meaningful.
  • Address domain-specific challenges: Tackle issues related to specialized medical terminology, document diversity, and the complexity of medical texts.

Methodology

Datasets

  1. CORD-19 Dataset: A large collection of over 1,000,000 scholarly articles on COVID-19 and related coronaviruses, freely accessible to support NLP and AI research.
  2. Biomedical Abstracts Dataset: A dataset from Hugging Face with 210,000 training abstracts and 45,000 each for validation and test sets, used for text summarization and NLP tasks.

Models Implemented

  • BART (Bidirectional and Auto-Regressive Transformers)
  • BERT (Bidirectional Encoder Representations from Transformers)
  • PEGASUS
  • T5 (Text-To-Text Transfer Transformer)

Evaluation Metrics

  • ROUGE (Recall-Oriented Understudy for Gisting Evaluation): Measures the quality of machine-generated summaries by comparing them to reference summaries, evaluating precision, recall, and F1-score.

Implementation

  1. Data Preprocessing: Tokenization and preparation of datasets for training.
  2. Model Training: Fine-tuning pre-trained transformer models using the biomedical dataset.
  3. Evaluation: Assessing model performance using ROUGE scores to ensure high-quality summarization.
  4. Summarization: Generating summaries for biomedical research articles and evaluating them qualitatively.

Results and Discussions

  • Performance: The fi

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

完整仓库:github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization

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