COVID-19开放研究数据集

包含大量COVID-19学术文章和生物医学摘要的文本数据集,用于摘要和NLP研究。

Arjun-08Arjun-08
GitHub
2024-05-17 更新
浏览 54
文本bartbertfine-tuningmedical-datasetnlppegasuspythonrouge-metricseq2seqsummarizationt5COVID-19
CORD-19 Dataset

基本信息

模态
文本
大小
0.02 GB
创建/更新时间
2024-05-17
版本
main

资源简介

COVID-19开放研究数据集

【数据集背景】

本数据集源站标题为《Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization》。源站首次发布:2024-05-17。

【数据内容】

源站原始描述:This repository explores the use of advanced sequence-to-sequence networks and transformer models, such as BERT, BART, PEGASUS, and T5, for summarizing multi-text documents in the medical domain. It leverages extensive datasets like CORD-19 and a Biomedical Abstracts dataset from Hugging Face to fine-tune these models. # Sequence-to-sequence networks for multi-text document summarization on medical dataset ## Overview This project explores the application of advanced sequence-to-sequence network…

【主题与分类】

主题标签:bart、bert、fine-tuning、medical-dataset、nlp、pegasus、python、rouge-metric、seq2seq、summarization。

【适用方向】

文本类数据可用于医学自然语言处理,如命名实体识别、信息抽取与文本分类。

【获取与许可】

源站页面:https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization

官方服务

专家保障全链路合规授权与标注交付

陕川双基地 × 超十家三甲医院直连

从合规授权、采集治理、专业标注到数据集交付,我们提供全链路闭环服务,让高质量临床数据即拿即用。

⚡️ 需要原始数据或标注支持?联系我们获取定制方案。

帮我联系

下载信息

注册下载

需要注册 Kaggle 账号并登录后下载,适合需要跟踪下载记录和使用 API 的用户。

暂未开放

公开下载

无需注册即可直接获取公开样本或文档,适合快速预览和评估数据集质量。

免登录

有偿下载

公开数据集受托下载与技术交付服务。

提供高速下载与技术交付服务(收技术服务费,非数据销售)

暂未开放

当前数据集主要来源为 Kaggle 公开托管,完整影像包建议通过原始链接或 Kaggle API 获取。

使用方式

数据集获取

git clone https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization.git

curl -L -o repo.zip https://github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization/archive/refs/heads/main.zip
unzip repo.zip

源站 README 摘录(使用方式)

Sequence-to-sequence networks for multi-text document summarization on medical dataset

Overview

This project explores the application of advanced sequence-to-sequence networks and transformer models for multi-text document summarization in the medical domain. Given the exponential growth of medical literature, efficiently summarizing this vast amount of information is crucial for healthcare professionals, researchers, and policymakers. Our research focuses on leveraging state-of-the-art natural language processing (NLP) techniques to generate concise, informative, and coherent summaries of medical documents.

Project Objectives

  • Develop and fine-tune transformer models: Utilize models such as BART, BERT, PEGASUS, and T5 for the task of summarizing biomedical research articles.
  • Evaluate model performance: Assess the summarization quality using metrics like ROUGE to ensure the generated summaries are accurate and meaningful.
  • Address domain-specific challenges: Tackle issues related to specialized medical terminology, document diversity, and the complexity of medical texts.

Methodology

Datasets

  1. CORD-19 Dataset: A large collection of over 1,000,000 scholarly articles on COVID-19 and related coronaviruses, freely accessible to support NLP and AI research.
  2. Biomedical Abstracts Dataset: A dataset from Hugging Face with 210,000 training abstracts and 45,000 each for validation and test sets, used for text summarization and NLP tasks.

Models Implemented

  • BART (Bidirectional and Auto-Regressive Transformers)
  • BERT (Bidirectional Encoder Representations from Transformers)
  • PEGASUS
  • T5 (Text-To-Text Transfer Transformer)

Evaluation Metrics

  • ROUGE (Recall-Oriented Understudy for Gisting Evaluation): Measures the quality of machine-generated summaries by comparing them to reference summaries, evaluating precision, recall, and F1-score.

Implementation

  1. Data Preprocessing: Tokenization and preparation of datasets for training.
  2. Model Training: Fine-tuning pre-trained transformer models using the biomedical dataset.
  3. Evaluation: Assessing model performance using ROUGE scores to ensure high-quality summarization.
  4. Summarization: Generating summaries for biomedical research articles and evaluating them qualitatively.

Results and Discussions

  • Performance: The fi

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

完整仓库:github.com/Arjun-08/Sequence-to-sequence-networks-for-multi-text-document-summarization

数据缺失?

依托陕西、四川两大基地,我们与超过十家三甲医院建立直接合作关系,覆盖合规授权、采集治理、专业标注、数据交付的全流程,为AI医疗团队提供即拿即用的高质量临床数据。

⚡️ 需要数据支持或标注服务?立即联系我们获取专业方案。

获取专属数据定制方案