COVID-19对先天性代谢错误诊断的影响：巴西一家参考中心的数据

数据集获取（Figshare）

• 源站标题：COVID-19 impact on the diagnosis of Inborn Errors of Metabolism: Data from a reference center in Brazil
• DOI：10.6084/m9.figshare.20018132.v1
• 发布日期：2022-06-07
• 文件数：6 个
• 文件总体积：314.58 KB
• 源站页面：https://scielo.figshare.com/articles/dataset/COVID-19_impact_on_the_diagnosis_of_Inborn_Errors_of_Metabolism_Data_from_a_reference_center_in_Brazil/20018132

命令行下载

curl -L -o "5cfe29846940eb42acbebfcc84e26db30b308294.jpg" "https://ndownloader.figshare.com/files/35699249"
curl -L -o "a8d5b8a48309926f8e27cc269f4cc2e0e90e20bb.jpg" "https://ndownloader.figshare.com/files/35699252"
curl -L -o "72f17a47094632d119aad235547dbbee6d169500.jpg" "https://ndownloader.figshare.com/files/35699255"
curl -L -o "5b790c84e4c588dea941ddbdc6297de2d5640eff.jpg" "https://ndownloader.figshare.com/files/35699258"
curl -L -o "Table_1.xls" "https://ndownloader.figshare.com/files/35699261"
curl -L -o "Table_2.xls" "https://ndownloader.figshare.com/files/35699264"

文件清单

• 5cfe29846940eb42acbebfcc84e26db30b308294.jpg（134.34 KB）
• a8d5b8a48309926f8e27cc269f4cc2e0e90e20bb.jpg（4.73 KB）
• 72f17a47094632d119aad235547dbbee6d169500.jpg（146.56 KB）
• 5b790c84e4c588dea941ddbdc6297de2d5640eff.jpg（5.40 KB）
• Table_1.xls（13.82 KB）
• Table_2.xls（9.73 KB）

文件总体积 314.58 KB（源站 API 实测）。

数据加载示例（图像类）

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

数据说明

Abstract The COVID-19 pandemic led to the reorganization of health care in several countries, including Brazil. Inborn Errors of Metabolism (IEM) are a group of rare and difficult to diagnose genetic diseases caused by pathogenic variants in genes that code for enzymes, cofactors, or structural proteins affecting different metabolic pathways. The aim of this study was to evaluate how COVID-19 affected the diagnosis of patients with IEM during the first year of the pandemic in Brazil comparing two distinct periods: from March 1st, 2019 to February 29th, 2020 (TIME A) and from March 1st, 2020 to February 28th, 2021 (TIME B), by the analysis of the number of tests and diagnoses performed in a Reference Center in South of Brazil. In the comparison TIME A with TIME B, we observe a reduction in the total number of tests performed (46%) and in the number of diagnoses (34%). In both periods analyzed, mucopolysaccharidoses (all subtypes combined) was the most frequent LD suspected and/or confirmed. Our data indicates a large reduction in the number of tests requested for the investigation of IEM and consequently a large reduction in the number of diagnoses caused by the COVID-19 pandemic leading to a significant underdiagnosis of IEM.

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.6084/m9.figshare.20018132.v1（source: https://scielo.figshare.com/articles/dataset/COVID-19_impact_on_the_diagnosis_of_Inborn_Errors_of_Metabolism_Data_from_a_reference_center_in_Brazil/20018132）。