儿科气管切开套管微生物组高变异性数据集

数据集获取（Figshare）

• 源站标题：High microbiome variability in pediatric tracheostomy cannulas in patients with similar clinical characteristics
• DOI：10.6084/m9.figshare.22785490.v1
• 发布日期：2023-05-09
• 文件数：6 个
• 文件总体积：3.39 MB
• 源站页面：https://scielo.figshare.com/articles/dataset/High_microbiome_variability_in_pediatric_tracheostomy_cannulas_in_patients_with_similar_clinical_characteristics/22785490

命令行下载

curl -L -o "bf2f658e523f203cdb3f6f9ae48801aac42c0fbb.tif" "https://ndownloader.figshare.com/files/40487092"
curl -L -o "2e504949fe7a103e177b86d6d3163ab0506bbbc1.png" "https://ndownloader.figshare.com/files/40487095"
curl -L -o "a507d2d04d4fd157eb575070ecbcddd55a3da796.jpg" "https://ndownloader.figshare.com/files/40487098"
curl -L -o "78708e2e386d6374127a197ccd8825b52993a26b.tif" "https://ndownloader.figshare.com/files/40487101"
curl -L -o "9c0bec1aeeb789b602e772f9e4877161dbcdf677.png" "https://ndownloader.figshare.com/files/40487104"
curl -L -o "9b134cc060e35367f744df9fa5c4b0d9c6fe8eac.jpg" "https://ndownloader.figshare.com/files/40487107"

文件清单

• bf2f658e523f203cdb3f6f9ae48801aac42c0fbb.tif（391.45 KB）
• 2e504949fe7a103e177b86d6d3163ab0506bbbc1.png（157.04 KB）
• a507d2d04d4fd157eb575070ecbcddd55a3da796.jpg（3.58 KB）
• 78708e2e386d6374127a197ccd8825b52993a26b.tif（2.52 MB）
• 9c0bec1aeeb789b602e772f9e4877161dbcdf677.png（320.92 KB）
• 9b134cc060e35367f744df9fa5c4b0d9c6fe8eac.jpg（5.53 KB）

文件总体积 3.39 MB（源站 API 实测）。

数据加载示例（图像类）

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

数据说明

Abstract Objectives: To evaluate the bacterial microbiome found in tracheostomy cannulas of a group of children diagnosed with glossoptosis secondary to Robin Sequence (RS), and its clinical implications. Methods: Pediatric patients were enrolled in the study at the time of the cannula change in the hospital. During this procedure, the removed cannula was collected and stored for amplicon sequencing of 16s rRNA. DNA extraction was performed using DNeasy PowerBiofilm Kit (QIAGEN® - Cat nº 24000-50) while sequencing was performed with the S5 (Ion S5™ System, Thermo Fisher Scientific), following Brazilian Microbiome Project (BMP) protocol. Results: All 12 patients included in the study were using tracheostomy uncuffed cannulas of the same brand, had tracheostomy performed for over 1-year and had used the removed cannula for approximately 3-months. Most abundant genera found were Aggregatibacter, Pseudomonas, Haemophilus, Neisseria, Staphylococcus, Fusobacterium, Moraxella, Streptococcus, Alloiococcus, and Capnocytophaga. Individual microbiome of each individual was highly variable, not correlating to any particular clinical characteristic. Conclusion: The microbiome of tracheostomy cannulas is highly variable, even among patients with similar clinical characteristics, making it challenging to determine a standard for normality. © 2022 Associa¸c˜ao Brasileira de Otorrinolaringologia e Cirurgia C´ervico-Facial. Published by Elsevier Editora Ltda. This is an open access article under the CC BY license (https://creativecommons.org/licenses/by/4.0/).

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.6084/m9.figshare.22785490.v1（source: https://scielo.figshare.com/articles/dataset/High_microbiome_variability_in_pediatric_tracheostomy_cannulas_in_patients_with_similar_clinical_characteristics/22785490）。