Data Sheet 2:使用共识大语言模型方法提高结构化数据提取的可靠性和准确性——多发性硬化症用例描述

基于共识大语言模型从多发性硬化症门诊报告中半自动化提取结构化数据的方法描述及30份匿名报告。

NIAID Data Ecosystem
浏览 22
文本data extractionlarge language modelmultiple sclerosisneurologyreal world evidencestructured data
Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description in multiple sclerosis.pdf

基本信息

模态
文本
大小
0.000207449 GB
许可
CC BY 4.0
创建/更新时间
2026-10-08
版本
v1

资源简介

Data Sheet 2:使用共识大语言模型方法提高结构化数据提取的可靠性和准确性——多发性硬化症用例描述

【一句话概览】

本数据集是 figshare 公开的文本数据集,收录 1 个文件、合计 207.45 KB,主题涵盖 data extraction、large language model、multiple sclerosis、neurology、real world evidence,可用于医学自然语言处理(实体识别、信息抽取等),CC BY 4.0 许可开放获取。

【数据集背景】

本数据集源站标题为《Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description in multiple sclerosis.pdf》。配套论文《Structured information extraction from scientific text with large language models》发表于 Nature Communications(2024),DOI:10.1038/s41467-024-45563-x。源站首次发布:2026-02-13。

【数据内容】

源站原始描述:BackgroundThe absence of standardization in the documentation of routine clinical data complicates research usage of retrospective data on a large-scale basis. Medically trained personnel is required for interpretation and conversion into a structured format making it time and cost intensive and creating a potential bias of such data. To address these challenges, we have developed a semi-automated approach for evaluating Multiple Sclerosis (MS) outpatients reports that utilizes different large-l…

【数据结构与技术规格】

文件数 1 个,合计 207.45 KB。Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description i.pdf:application/pdf,207.45 KB。数据集 DOI:10.3389/frai.2026.1658575.s003。

【主题与分类】

源站学科分类:Knowledge Representation and Machine Learning。主题标签:data extraction、large language model、multiple sclerosis、neurology、real world evidence、structured data。

【适用方向】

文本类数据可用于医学自然语言处理,如命名实体识别、信息抽取与文本分类。

【获取与许可】

源站页面:https://frontiersin.figshare.com/articles/dataset/Data_Sheet_2_Improving_reliability_and_accuracy_of_structured_data_extraction_using_a_consensus_large-language_model_approach_a_use_case_description_in_multiple_sclerosis_pdf/31330897

使用许可:CC BY 4.0(https://creativecommons.org/licenses/by/4.0/)。

规范引用:Poser, Philip Lennart; Klimas, Rafael; Luerweg, Justus; Reuter, Emilie; Hanefeld, Christoph; Gold, Ralf; et al. (2026). Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description in multiple sclerosis.pdf. Fron…

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下载信息

注册下载

需要注册 Kaggle 账号并登录后下载,适合需要跟踪下载记录和使用 API 的用户。

暂未开放

公开下载

无需注册即可直接获取公开样本或文档,适合快速预览和评估数据集质量。

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提供高速下载与技术交付服务(收技术服务费,非数据销售)

暂未开放

当前数据集主要来源为 Kaggle 公开托管,完整影像包建议通过原始链接或 Kaggle API 获取。

使用方式

数据集获取(Figshare)

命令行下载

curl -L -o "Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description i.pdf" "https://ndownloader.figshare.com/files/61861231"

文件清单

  • Data Sheet 2_Improving reliability and accuracy of structured data extraction using a consensus large-language model approach–a use case description i.pdf(207.45 KB)

文件总体积 207.45 KB(源站 API 实测)。

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

数据说明

BackgroundThe absence of standardization in the documentation of routine clinical data complicates research usage of retrospective data on a large-scale basis. Medically trained personnel is required for interpretation and conversion into a structured format making it time and cost intensive and creating a potential bias of such data. To address these challenges, we have developed a semi-automated approach for evaluating Multiple Sclerosis (MS) outpatients reports that utilizes different large-language models (LLM) and their consensus in comparison to manual evaluation.
MethodsWe used several commercially available LLMs by OpenAI, Anthropic and Google to create a structured output of several variables with differing complexity of 30 anonymized outpatient reports with zero-shot-learning. We added a consensus output by combining the results of three different LLMs. Over several runs, we adapted the prompt, compared the results with a reference and assessed the error rate. Any deviation from the reference was considered an error. A true-error rate was determined for the LLM consensus output and the neurology specialist output, where only content deviations are counted as errors.
ResultsThrough 9 iterations of improving the structure and content of the prompt, we have seen a clear reduction in the error rate of the various LLMs. By creating an LLM consensus with the final prompt design, we were able to overcome a ceiling effect in reducing the error rate. With a true-error rate of 1.48%, the LLM consensus shows a similar error rate as neurologists (around 2%) in the creation of structured data.
DiscussionOur method enables fast and reliable LLM-based analysis of large clinical routine data sets of varying complexity with a low technical barrier to entry. By generating an LLM consensus, we were able to considerably improve the quality of the output making it comparable to data created by neurology specialists. This approach allows large amounts of unstructured data to be analyzed in a time and cost-efficient manner. Nevertheless, the evaluation of errors in results produced by LLM remains difficult. Scientific work using such methods must continue to be subject to st

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.3389/frai.2026.1658575.s003(source: https://frontiersin.figshare.com/articles/dataset/Data_Sheet_2_Improving_reliability_and_accuracy_of_structured_data_extraction_using_a_consensus_large-language_model_approach_a_use_case_description_in_multiple_sclerosis_pdf/31330897)。

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