原发性维生素D靶向基因:维生素D3补充可能益处的分类

基于71名前糖尿病个体的维生素D3干预试验数据,研究维生素D靶向基因CD14和THBD作为补充益处生物标志物的表达变化。

Figshare
2016-01-18 更新
浏览 17
表格Biochemistrylipidssterolshormonesgeneticsgene expressiongenomicsGenome analysis toolstranscriptomesMolecular cell biologySignal transductionNuclear receptor signaling
Primary Vitamin D Target Genes Allow a Categorization of Possible Benefits of Vitamin D3 Supplementation

基本信息

模态
表格
大小
0.004384612 GB
许可
CC BY 4.0
创建/更新时间
2016-01-18
版本
v1

资源简介

原发性维生素D靶向基因:维生素D3补充可能益处的分类

【一句话概览】

本数据集是 figshare 公开的结构化表格数据集,收录 2 个文件、合计 4.38 MB,主题涵盖 Biochemistry、lipids、sterols、hormones、genetics,可用于统计建模、特征工程与队列分析,CC BY 4.0 许可开放获取。

【数据集背景】

本数据集源站标题为《Primary Vitamin D Target Genes Allow a Categorization of Possible Benefits of Vitamin D3 Supplementation》。配套论文《Primary Vitamin D Target Genes Allow a Categorization of Possible Benefits of Vitamin D3 Supplementation》发表于 PLoS ONE(2013),DOI:10.1371/journal.pone.0071042。源站首次发布:2013-07-29。

【数据内容】

源站原始描述:Vitamin D deficiency has been associated with an increased risk of developing a number of diseases. Here we investigated samples from 71 pre-diabetic individuals of the VitDmet study, a 5-month high dose vitamin D3 intervention trial during Finnish winter, for their changes in serum 25-hydroxyvitamin D3 (25(OH)D3) concentrations and the expression of primary vitamin D target genes in peripheral blood mononuclear cells and adipose tissue. A negative correlation between serum concentrations of par…

【数据结构与技术规格】

文件数 2 个,合计 4.38 MB。File_S1.pdf:application/pdf,4.33 MB。File_S2.xlsx:application/vnd.openxmlformats-officedocument.spreadsheetml.sheet,58.77 KB。数据集 DOI:10.1371/journal.pone.0071042。

【主题与分类】

源站学科分类:Medicine、Biological Sciences。主题标签:Biochemistry、lipids、sterols、hormones、genetics、gene expression、genomics、Genome analysis tools、transcriptomes、Molecular cell biology。

【适用方向】

结构化表格数据可直接用于统计建模、特征工程与队列分析。

【获取与许可】

源站页面:https://plos.figshare.com/articles/dataset/Primary_Vitamin_D_Target_Genes_Allow_a_Categorization_of_Possible_Benefits_of_Vitamin_D_3_Supplementation/758248

使用许可:CC BY 4.0(https://creativecommons.org/licenses/by/4.0/)。

规范引用:Carlberg, Carsten; Seuter, Sabine; D. F. de Mello, Vanessa; Schwab, Ursula; Voutilainen, Sari; Pulkki, Kari; et al. (2016). Primary Vitamin D Target Genes Allow a Categorization of Possible Benefits of Vitamin D3 Supplementation. PLOS ONE. Dataset

【使用注意】

· 源站最后修改于 2023-06-01,引用时请注意版本时效。

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下载信息

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当前数据集主要来源为 Kaggle 公开托管,完整影像包建议通过原始链接或 Kaggle API 获取。

使用方式

数据集获取(Figshare)

命令行下载

curl -L -o "File_S1.pdf" "https://ndownloader.figshare.com/files/1135058"
curl -L -o "File_S2.xlsx" "https://ndownloader.figshare.com/files/1135059"

文件清单

  • File_S1.pdf(4.33 MB)
  • File_S2.xlsx(58.77 KB)

文件总体积 4.38 MB(源站 API 实测)。

数据说明

Vitamin D deficiency has been associated with an increased risk of developing a number of diseases. Here we investigated samples from 71 pre-diabetic individuals of the VitDmet study, a 5-month high dose vitamin D3 intervention trial during Finnish winter, for their changes in serum 25-hydroxyvitamin D3 (25(OH)D3) concentrations and the expression of primary vitamin D target genes in peripheral blood mononuclear cells and adipose tissue. A negative correlation between serum concentrations of parathyroid hormone and 25(OH)D3 suggested an overall normal physiological vitamin D response among the participants. The genes CD14 and thrombomodulin (THBD) are up-regulated primary vitamin D targets and showed to be suitable gene expression markers for vitamin D signaling in both primary tissues. However, in a ranking of the samples concerning their expected response to vitamin D only the top half showed a positive correlation between the changes of CD14 or THBD mRNA and serum 25(OH)D3 concentrations. Interestingly, this categorization allows unmasking a negative correlation between changes in serum concentrations of 25(OH)D3 and the inflammation marker interleukin 6. We propose the genes CD14 and THBD as transcriptomic biomarkers, from which the effects of a vitamin D3 supplementation can be evaluated. These biomarkers allow the classification of subjects into those, who might benefit from a vitamin D3 supplementation, and others who do not.

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.1371/journal.pone.0071042(source: https://plos.figshare.com/articles/dataset/Primary_Vitamin_D_Target_Genes_Allow_a_Categorization_of_Possible_Benefits_of_Vitamin_D_3_Supplementation/758248)。

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