公共数据集上的定量比较

包含1068对高质量和低质量眼底图像,用于眼底图像增强研究的医学影像数据集。

Figshare
2023-03-16 更新
浏览 17
医学影像simulate major aspectshealth screening programfour different opencomprising 1068 pairsungradable fundus photographsretinal image degradationautomatically enhances loworiginal lq imagesenhance lq imagesnew deep learningcomplex degradation significantlyquality fundus images
Quantitative comparison on public datasets.

基本信息

模态
医学影像
大小
0.000005632 GB
许可
CC BY 4.0
创建/更新时间
2023-03-16
版本
v1

资源简介

公共数据集上的定量比较

【数据集背景】

本数据集源站标题为《Quantitative comparison on public datasets.》。源站首次发布:2023-03-16。

【数据内容】

源站原始描述:Problem Low-quality fundus images with complex degredation can cause costly re-examinations of patients or inaccurate clinical diagnosis. Aim This study aims to create an automatic fundus macular image enhancement framework to improve low-quality fundus images and remove complex image degradation. Method We propose a new deep learning-based model that automatically enhances low-quality retinal fundus images that suffer from complex degradation. We collected a dataset, comprising 1068 pairs of hi…

【数据结构与技术规格】

文件数 1 个,合计 5.63 KB。Table 2.xls:application/vnd.ms-excel,5.63 KB。数据集 DOI:10.1371/journal.pone.0282416.t002。

【主题与分类】

源站学科分类:Space Science、Medicine、Cell Biology、Biotechnology、Science Policy。主题标签:simulate major aspects、health screening program、four different open、comprising 1068 pairs、ungradable fundus photographs、retinal image degradation、automatically enhances low、original lq images、enhance lq images、new deep learning。

【适用方向】

影像类数据可用于医学图像分析模型(检测、分割、分类)的训练与评测,也可用于标注质量与成像参数相关性的研究。

【获取与许可】

源站页面:https://plos.figshare.com/articles/dataset/Quantitative_comparison_on_public_datasets_/22286455

使用许可:CC BY 4.0(https://creativecommons.org/licenses/by/4.0/)。

规范引用:Lee, Kang Geon; Song, Su Jeong; Lee, Soochahn; Yu, Hyeong Gon; Kim, Dong Ik; Lee, Kyoung Mu (2023). Quantitative comparison on public datasets.. PLOS ONE. Dataset

【使用注意】

· 源站最后修改于 2023-06-15,引用时请注意版本时效。

官方服务

专家保障全链路合规授权与标注交付

陕川双基地 × 超十家三甲医院直连

从合规授权、采集治理、专业标注到数据集交付,我们提供全链路闭环服务,让高质量临床数据即拿即用。

⚡️ 需要原始数据或标注支持?联系我们获取定制方案。

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下载信息

注册下载

需要注册 Kaggle 账号并登录后下载,适合需要跟踪下载记录和使用 API 的用户。

暂未开放

公开下载

无需注册即可直接获取公开样本或文档,适合快速预览和评估数据集质量。

免登录

当前数据集主要来源为 Kaggle 公开托管,完整影像包建议通过原始链接或 Kaggle API 获取。

免费样本无法满足模型训练要求?千方提供经三甲医院脱敏、带病理回证与专家标注的商业级专病数据集。

使用方式

数据集获取(Figshare)

命令行下载

curl -L -o "Table 2.xls" "https://ndownloader.figshare.com/files/39635632"

文件清单

  • Table 2.xls(5.63 KB)

文件总体积 5.63 KB(源站 API 实测)。

数据加载示例(图像类)

from PIL import Image
import glob, os

files = (glob.glob(os.path.join(path, "**", "*.png"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.jpg"), recursive=True)
       + glob.glob(os.path.join(path, "**", "*.tif"), recursive=True))
print("图像文件数:", len(files))
img = Image.open(files[0]); print("尺寸/模式:", img.size, img.mode)

# torchvision Dataset 方式:
# from torchvision import datasets
# ds = datasets.ImageFolder(path)  # 要求 子目录=类别

目录组织与标注格式以源站说明和下载后实际文件为准。

数据说明

Problem
Low-quality fundus images with complex degredation can cause costly re-examinations of patients or inaccurate clinical diagnosis.
Aim
This study aims to create an automatic fundus macular image enhancement framework to improve low-quality fundus images and remove complex image degradation.
Method
We propose a new deep learning-based model that automatically enhances low-quality retinal fundus images that suffer from complex degradation. We collected a dataset, comprising 1068 pairs of high-quality (HQ) and low-quality (LQ) fundus images from the Kangbuk Samsung Hospital’s health screening program and ophthalmology department from 2017 to 2019. Then, we used these dataset to develop data augmentation methods to simulate major aspects of retinal image degradation and to propose a customized convolutional neural network (CNN) architecture to enhance LQ images, depending on the nature of the degradation. Peak signal-to-noise ratio (PSNR), structural similarity index measure (SSIM), r-value (linear index of fuzziness), and proportion of ungradable fundus photographs before and after the enhancement process are calculated to assess the performance of proposed model. A comparative evaluation is conducted on an external database and four different open-source databases.
Results
The results of the evaluation on the external test dataset showed an significant increase in PSNR and SSIM compared with the original LQ images. Moreover, PSNR and SSIM increased by over 4 dB and 0.04, respectively compared with the previous state-of-the-art methods (P P = 0.012).
Conclusion
Our enhancement process improves LQ fundus images that suffer from complex degradation significantly. Moreover our customized CNN achieved improved performance over the existing state-of-the-art methods. Overall, our framework can have a clinical impact on reducing re-examinations and improving the accuracy of diagnosis.

许可

CC BY 4.0

引用

学术使用请引用 DOI 10.1371/journal.pone.0282416.t002(source: https://plos.figshare.com/articles/dataset/Quantitative_comparison_on_public_datasets_/22286455)。

需要用于商业化训练或医疗器械注册(NMPA/FDA)?

公开数据往往缺乏完整的病理回证与专家标注。千方医数集依托陕川双基地与超十家三甲医院直连,提供完全合规、去标识化、支持注册级质控的专病数据集交易服务。